PINBPA: Cytoscape app for network analysis of GWAS data

نویسندگان

  • Lili Wang
  • Takuya Matsushita
  • Lohith Madireddy
  • Parvin Mousavi
  • Sergio Baranzini
چکیده

UNLABELLED Protein interaction network-based pathway analysis (PINBPA) for genome-wide association studies (GWAS) has been developed as a Cytoscape app, to enable analysis of GWAS data in a network fashion. Users can easily import GWAS summary-level data, draw Manhattan plots, define blocks, prioritize genes with random walk with restart, detect enriched subnetworks and test the significance of subnetworks via a user-friendly interface. AVAILABILITY AND IMPLEMENTATION PINBPA app is freely available in Cytoscape app store. SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.

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عنوان ژورنال:
  • Bioinformatics

دوره 31 2  شماره 

صفحات  -

تاریخ انتشار 2015